PRISM
v1.1.1
User Documentation
Introduction
Why use PRISM?
Getting started
Installation
Running tests
Example usage
The PRISM pipeline
MPI implementation
ModelLink: A crash course
Writing a ModelLink subclass
Data identifiers (
data_idx
)
Wrapping a model (
call_model
)
Input arguments
Multi-calling
Model discrepancy variance (
md_var
)
Theory
Implementation
Using PRISM
Minimal example
Projections
Properties
Options
Dual nature (normal/worker mode)
Hybrid sampling
Algorithm
Usage
Application
General usage rules
External data files
PRISM parameters file
Model parameters file
Model data file
Descriptions
Terminology
PRISM parameters
HDF5
FAQ
How do I contribute?
How do I report a bug/problem?
What does the term
…
mean?
What OS are supported?
Community guidelines
License
Additions
API Reference
Pipeline
Emulator
ModelLink
Classes
GaussianLink
ModelLink
SineWaveLink
Functions
Utilities
Internal
PRISM
Docs
»
Index
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
|
W
_
__init__() (prism.Emulator method)
(prism.Pipeline method)
(prism.modellink.GaussianLink method)
(prism.modellink.ModelLink method)
_assign_data_idx() (prism.Emulator method)
_assign_emul_s() (prism.Emulator method)
_call_model() (prism.Pipeline method)
_check_mod_set() (prism.modellink.ModelLink method)
_check_sam_set() (prism.modellink.ModelLink method)
_cleanup_emul_files() (prism.Emulator method)
_compile_code_snippets() (prism.Pipeline method)
_construct_iteration() (prism.Emulator method)
_create_new_emulator() (prism.Emulator method)
_default_model_data (prism.modellink.ModelLink attribute)
_default_model_parameters (prism.modellink.ModelLink attribute)
_do_impl_check() (prism.Pipeline method)
_do_regression() (prism.Emulator method)
_evaluate() (prism.Emulator method)
_evaluate_model() (prism.Pipeline method)
_evaluate_sam_set() (prism.Pipeline method)
_get_active_par() (prism.Emulator method)
_get_adj_exp() (prism.Emulator method)
_get_adj_var() (prism.Emulator method)
_get_backup_path() (prism.modellink.ModelLink method)
_get_cov() (prism.Emulator method)
_get_cov_matrix() (prism.Emulator method)
_get_default_parameters() (prism.Emulator method)
(prism.Pipeline method)
_get_emul_i() (prism.Emulator method)
_get_eval_sam_set() (prism.Pipeline method)
_get_exp_dot_term() (prism.Emulator method)
_get_ext_real_set() (prism.Pipeline method)
_get_impl_cut() (prism.Pipeline method)
_get_impl_par() (prism.Pipeline method)
_get_inv_matrix() (prism.Emulator method)
_get_iteration_data() (prism.Pipeline method)
_get_md_var() (prism.Pipeline method)
_get_mock_data() (prism.Pipeline method)
_get_model_par_seq() (prism.modellink.ModelLink method)
_get_n_eval_sam() (prism.Pipeline method)
_get_paths() (prism.Pipeline method)
_get_prior_exp() (prism.Emulator method)
_get_regr_cov() (prism.Emulator method)
_get_uni_impl() (prism.Pipeline method)
_listen_for_calls() (prism.Pipeline method)
_load_data() (prism.Emulator method)
(prism.Pipeline method)
_load_emulator() (prism.Emulator method)
_make_backup() (prism.modellink.ModelLink method)
_make_call() (prism.Pipeline method)
_ModelLink__set_model_data() (prism.modellink.ModelLink method)
_ModelLink__set_model_parameters() (prism.modellink.ModelLink method)
_multi_call_model() (prism.Pipeline method)
_prepare_new_iteration() (prism.Emulator method)
_Projection__analyze_proj_hcube() (prism.Pipeline method)
_Projection__draw_2D_proj_fig() (prism.Pipeline method)
_Projection__draw_3D_proj_fig() (prism.Pipeline method)
_Projection__get_default_input_arguments() (prism.Pipeline method)
_Projection__get_default_parameters() (prism.Pipeline method)
_Projection__get_fig_path() (prism.Pipeline method)
_Projection__get_hcube_name() (prism.Pipeline method)
_Projection__get_proj_data() (prism.Pipeline method)
_Projection__get_proj_hcube() (prism.Pipeline method)
_Projection__get_req_hcubes() (prism.Pipeline method)
_Projection__prepare_projections() (prism.Pipeline method)
_Projection__process_input_arguments() (prism.Pipeline method)
_Projection__read_parameters() (prism.Pipeline method)
_Projection__save_data() (prism.Pipeline method)
_read_backup() (prism.modellink.ModelLink method)
_read_data_idx() (prism.Emulator method)
_read_parameters() (prism.Emulator method)
(prism.Pipeline method)
_retrieve_parameters() (prism.Emulator method)
_save_data() (prism.Emulator method)
(prism.Pipeline method)
_save_statistics() (prism.Pipeline method)
_set_mock_data() (prism.Emulator method)
_set_modellink() (prism.Emulator method)
_to_par_space() (prism.modellink.ModelLink method)
_to_unit_space() (prism.modellink.ModelLink method)
_write_data_idx() (prism.Emulator method)
A
active_emul_s (prism.Emulator attribute)
active_par (prism.Emulator attribute)
active_par_data (prism.Emulator attribute)
analyze() (prism.Pipeline method)
B
base_eval_sam (prism.Pipeline attribute)
bcast() (prism._internal.PRISM_Comm method)
C
call_model() (prism.modellink.ModelLink method)
call_type (prism.modellink.ModelLink attribute)
ccheck (prism.Emulator attribute)
CFilter (class in prism._internal)
check_compatibility() (in module prism._internal)
check_instance() (in module prism._internal)
check_vals() (in module prism._internal)
code_objects (prism.Pipeline attribute)
comm (prism.Pipeline attribute)
construct() (prism.Pipeline method)
convert_str_seq() (in module prism._internal)
cov_mat_inv (prism.Emulator attribute)
criterion (prism.Pipeline attribute)
cut_idx (prism.Pipeline attribute)
D
data_err (prism.modellink.ModelLink attribute)
data_idx (prism.modellink.ModelLink attribute)
data_spc (prism.modellink.ModelLink attribute)
data_val (prism.modellink.ModelLink attribute)
delist() (in module prism._internal)
details() (prism.Pipeline method)
do_active_anal (prism.Pipeline attribute)
do_logging (prism.Pipeline attribute)
docstring_append() (in module prism._internal)
docstring_copy() (in module prism._internal)
docstring_substitute() (in module prism._internal)
E
emul_i (prism.Emulator attribute)
emul_load (prism.Emulator attribute)
emul_s (prism.Emulator attribute)
emul_s_to_core (prism.Emulator attribute)
emul_type (prism.Emulator attribute)
Emulator (class in prism)
emulator (prism.Pipeline attribute)
evaluate() (prism.Pipeline method)
exp_dot_term (prism.Emulator attribute)
F
FeatureWarning
File (prism.Pipeline attribute)
freeze_active_par (prism.Pipeline attribute)
G
gather() (prism._internal.PRISM_Comm method)
GaussianLink (class in prism.modellink)
get_default_model_data() (prism.modellink.ModelLink method)
get_default_model_parameters() (prism.modellink.ModelLink method)
get_formatter() (in module prism._internal)
get_handler() (in module prism._internal)
get_info() (in module prism._internal)
get_lnpost_fn() (in module prism.utils)
get_md_var() (prism.modellink.ModelLink method)
get_PRISM_File() (in module prism._internal)
get_str_repr() (prism.modellink.ModelLink method)
get_walkers() (in module prism.utils)
getCLogger() (in module prism._internal)
getLogger() (in module prism._internal)
getRLogger() (in module prism._internal)
H
hdf5_file (prism.Pipeline attribute)
I
impl_cut (prism.Pipeline attribute)
impl_sam (prism.Pipeline attribute)
import_cmaps() (in module prism._internal)
is_controller (prism.Pipeline attribute)
is_worker (prism.Pipeline attribute)
L
l_corr (prism.Emulator attribute)
M
method (prism.Emulator attribute)
mod_set (prism.Emulator attribute)
ModelLink (class in prism.modellink)
modellink (prism.Pipeline attribute)
move_logger() (in module prism._internal)
MPI_call (prism.modellink.ModelLink attribute)
multi_call (prism.modellink.ModelLink attribute)
N
n_cross_val (prism.Emulator attribute)
n_data (prism.modellink.ModelLink attribute)
n_emul_s (prism.Emulator attribute)
n_emul_s_tot (prism.Emulator attribute)
n_eval_sam (prism.Pipeline attribute)
n_gaussians (prism.modellink.GaussianLink attribute)
n_impl_sam (prism.Pipeline attribute)
n_par (prism.modellink.ModelLink attribute)
n_sam (prism.Emulator attribute)
n_sam_init (prism.Pipeline attribute)
name (prism.modellink.ModelLink attribute)
np_array() (in module prism._internal)
P
par_est (prism.modellink.ModelLink attribute)
par_name (prism.modellink.ModelLink attribute)
par_rng (prism.modellink.ModelLink attribute)
Pipeline (class in prism)
poly_coef (prism.Emulator attribute)
poly_coef_cov (prism.Emulator attribute)
poly_idx (prism.Emulator attribute)
poly_order (prism.Emulator attribute)
poly_powers (prism.Emulator attribute)
pot_active_par (prism.Pipeline attribute)
prism._internal (module)
prism.utils (module)
PRISM_Comm (class in prism._internal)
prism_file (prism.Pipeline attribute)
PRISM_Logger (class in prism._internal)
proj_depth (prism.Pipeline attribute)
proj_res (prism.Pipeline attribute)
project() (prism.Pipeline method)
Python Enhancement Proposals
PEP 377
R
raise_error() (in module prism._internal)
raise_warning() (in module prism._internal)
rank (prism.Pipeline attribute)
RequestError
RequestWarning
RFilter (class in prism._internal)
root_dir (prism.Pipeline attribute)
rprint() (in module prism._internal)
rsdl_var (prism.Emulator attribute)
run() (prism.Pipeline method)
S
sam_set (prism.Emulator attribute)
set_base_logger() (in module prism._internal)
sigma (prism.Emulator attribute)
SineWaveLink (class in prism.modellink)
single_call (prism.modellink.ModelLink attribute)
size (prism.Pipeline attribute)
T
test_subclass() (in module prism.modellink)
U
use_mock (prism.Emulator attribute)
use_regr_cov (prism.Emulator attribute)
W
worker_mode (prism.Pipeline attribute)
working_dir (prism.Pipeline attribute)
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